Output format

TransduTIS will send to the informed e-mail a result with the below format:

AUG_NUMBER; STATUS; AUG_POSITION; LABEL

Where:

The column named AUG_NUMBER identify the number of the AUG found in the input File.

The column named STATUS identify if the AUG found could be classified by the TransduTIS (CLASSIFIED) or (non-CLASSIFIED). For each AUG of the molecule, are considered 9 nucleotides in the upstream region and 1081 in the downstream region. If these requirements are not found, the result will be considered as non-CLASSIFIED.

The column named AUG_POSITION identify the position of the AUG on the molecule of mRNA.

The column named LABEL identify the TIS classification of the AUG. If the label is +1 it indicate that this AUG should be a TIS, otherwise if the label is -1 it is not.

The last line of the output format has the runtime of TransduTIS classification.

For example, consider the mRNA molecule (NM_001291723.1) of the Homo sapiens organism.

The result of the evaluation of this molecule is:

AUG_NUMBER;STATUS;AUG_POSITION;LABEL
1;CLASSIFIED;30;-1
2;CLASSIFIED;80;-1
3;CLASSIFIED;440;-1
4;CLASSIFIED;506;-1
5;CLASSIFIED;550;-1
6;CLASSIFIED;588;+1
7;CLASSIFIED;592;-1
8;CLASSIFIED;642;+1
9;CLASSIFIED;691;-1
10;CLASSIFIED;744;+1
11;CLASSIFIED;850;-1
12;CLASSIFIED;865;-1
13;CLASSIFIED;879;+1
14;CLASSIFIED;903;+1
15;CLASSIFIED;925;-1
16;CLASSIFIED;973;-1
17;CLASSIFIED;1039;-1
18;CLASSIFIED;1177;-1
19;CLASSIFIED;1225;-1
20;CLASSIFIED;1247;-1
21;CLASSIFIED;1285;-1
22;CLASSIFIED;1383;+1
23;CLASSIFIED;1412;-1
24;CLASSIFIED;1579;-1
25;CLASSIFIED;1623;+1
26;CLASSIFIED;1626;+1
27;CLASSIFIED;1629;+1
28;non-CLASSIFIED;1668;--
29;non-CLASSIFIED;1749;--
30;non-CLASSIFIED;1761;--
31;non-CLASSIFIED;1764;--
32;non-CLASSIFIED;1773;--
33;non-CLASSIFIED;1837;--
34;non-CLASSIFIED;1847;--
35;non-CLASSIFIED;1878;--
36;non-CLASSIFIED;1950;--
37;non-CLASSIFIED;1971;--
38;non-CLASSIFIED;1999;--
39;non-CLASSIFIED;2047;--
40;non-CLASSIFIED;2100;--
41;non-CLASSIFIED;2121;--
42;non-CLASSIFIED;2143;--
43;non-CLASSIFIED;2187;--
44;non-CLASSIFIED;2193;--
45;non-CLASSIFIED;2220;--
46;non-CLASSIFIED;2313;--
47;non-CLASSIFIED;2362;--
48;non-CLASSIFIED;2448;--
49;non-CLASSIFIED;2478;--
50;non-CLASSIFIED;2489;--
51;non-CLASSIFIED;2502;--
52;non-CLASSIFIED;2530;--
53;non-CLASSIFIED;2622;--
54;non-CLASSIFIED;2669;--
55;non-CLASSIFIED;2675;--
56;non-CLASSIFIED;2708;--
57;non-CLASSIFIED;2724;--
Runtime: 6s


Please send comments and questions to Pinto, Cristiano

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